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15 commits

Author SHA1 Message Date
Jeremie Fraeys
e557313e08
fix: context reuse benchmark uses temp directory 
- Replace hardcoded testdata path with b.TempDir()
- Add createSmallDataset helper for self-contained benchmarks
- Fixes FAIL: BenchmarkContextReuse / BenchmarkSequentialHashes
 2026-02-21 14:38:00 -05:00
Jeremie Fraeys
5f8e7c59a5
fix: resolve undefined DirOverallSHA256HexParallel in benchmark files 
- Replace worker.DirOverallSHA256HexParallel with worker.DirOverallSHA256Hex
- Fixes in dataset_hash_bench_test.go and hash_bench_test.go
- All benchmarks pass with native_libs build tag
 2026-02-21 14:30:22 -05:00
Jeremie Fraeys
fa383ebc6f
fix: benchmark function name and verify native context reuse 2026-02-21 14:28:04 -05:00
Jeremie Fraeys
158c525bef
fix: resolve benchmark and build tag conflicts 
- Remove duplicate hash_selector.go (build tags handle switching)
- Fix benchmark to use worker.DirOverallSHA256Hex
- Fix snapshot_store.go to use integrity.DirOverallSHA256Hex directly
- Native tests pass, benchmarks now correctly test native vs Go
 2026-02-21 14:26:48 -05:00
Jeremie Fraeys
90d702823b
fix: correct C type cast and add context reuse benchmark 
- Fix C.uint32_t cast for runtime.NumCPU() in native_bridge_libs.go
- Add context_reuse_bench_test.go to verify performance gains
- All native tests pass (8/8)
- Benchmarks functional
 2026-02-21 14:20:40 -05:00
Jeremie Fraeys
23e5f3d1dc
refactor(api): internal refactoring for TUI and worker modules 
- Refactor internal/worker and internal/queue packages
- Update cmd/tui for monitoring interface
- Update test configurations
 2026-02-20 15:51:23 -05:00
Jeremie Fraeys
37aad7ae87
feat: add manifest signing and native hashing support 
- Integrate RunManifest.Validate with existing Validator
- Add manifest Sign() and Verify() methods
- Add native C++ hashing libraries (dataset_hash, queue_index)
- Add native bridge for Go/C++ integration
- Add deduplication support in queue
 2026-02-19 15:34:39 -05:00
Jeremie Fraeys
6c83bda608
test(benchmarks): add tolerance to response packet regression test 
Add 5% tolerance for timing noise to prevent flaky failures from
nanosecond-level benchmark variations
 2026-02-18 12:45:40 -05:00
Jeremie Fraeys
38c09c92bb
test(benchmarks): fix native lib benchmarks when disabled 
- Add skip checks to native queue benchmarks when FETCHML_NATIVE_LIBS=0
- Skip TestGoNativeArtifactScanLeak cleanly instead of 100 warnings
- Add build tags (!native_libs/native_libs) for Go vs Native comparison
- Add benchmark-native and benchmark-compare Makefile targets
 2026-02-18 12:45:30 -05:00
Jeremie Fraeys
7305e2bc21
test: add comprehensive test coverage and command improvements 
- Add logs and debug end-to-end tests
- Add test helper utilities
- Improve test fixtures and templates
- Update API server and config lint commands
- Add multi-user database initialization
 2026-02-16 20:38:15 -05:00
Jeremie Fraeys
d408a60eb1
ci: push all workflow updates
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2026-02-12 13:28:15 -05:00
Jeremie Fraeys
2854d3df95
chore(cleanup): remove legacy artifacts and add tooling configs
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- Remove .github/ directory (migrated to .forgejo/)
- Remove .local-artifacts/ benchmark results
- Add AGENTS.md for coding assistants
- Add .windsurf/rules/ for development guidelines
- Update .gitignore
 2026-02-12 12:06:09 -05:00
Jeremie Fraeys
72b4b29ecd
perf: add profiling benchmarks and parallel Go baseline for C++ optimization 
Add comprehensive benchmarking suite for C++ optimization targets:
- tests/benchmarks/dataset_hash_bench_test.go - dirOverallSHA256Hex profiling
- tests/benchmarks/queue_bench_test.go - filesystem queue profiling
- tests/benchmarks/artifact_and_snapshot_bench_test.go - scanArtifacts/extractTarGz profiling
- tests/unit/worker/artifacts_test.go - moved from internal/ for clean separation

Add parallel Go implementation as baseline for C++ comparison:
- internal/worker/data_integrity.go: dirOverallSHA256HexParallel() with worker pool
- Benchmarks show 2.1x speedup (3.97ms -> 1.90ms) vs sequential

Exported wrappers for testing:
- ScanArtifacts() - artifact scanning
- ExtractTarGz() - tar.gz extraction
- DirOverallSHA256HexParallel() - parallel hashing

Profiling results (Apple M2 Ultra):
- dirOverallSHA256Hex: 78% syscall overhead (target for mmap C++)
- rebuildIndex: 96% syscall overhead (target for binary index C++)
- scanArtifacts: 87% syscall overhead (target for fast traversal C++)
- extractTarGz: 95% syscall overhead (target for parallel gzip C++)

Related: C++ optimization strategy in memory 5d5f0bb6
 2026-02-12 12:04:02 -05:00
Jeremie Fraeys
a8287f3087 test: expand unit/integration/e2e coverage for new worker/api behavior 2026-01-05 12:31:36 -05:00
Jeremie Fraeys
ea15af1833 Fix multi-user authentication and clean up debug code 
- Fix YAML tags in auth config struct (json -> yaml)
- Update CLI configs to use pre-hashed API keys
- Remove double hashing in WebSocket client
- Fix port mapping (9102 -> 9103) in CLI commands
- Update permission keys to use jobs:read, jobs:create, etc.
- Clean up all debug logging from CLI and server
- All user roles now authenticate correctly:
  * Admin: Can queue jobs and see all jobs
  * Researcher: Can queue jobs and see own jobs
  * Analyst: Can see status (read-only access)

Multi-user authentication is now fully functional.
 2025-12-06 12:35:32 -05:00