- Move ci-test.sh and setup.sh to scripts/
- Trim docs/src/zig-cli.md to current structure
- Replace hardcoded secrets with placeholders in configs
- Update .gitignore to block .env*, secrets/, keys, build artifacts
- Slim README.md to reflect current CLI/TUI split
- Add cleanup trap to ci-test.sh
- Ensure no secrets are committed
- Fix YAML tags in auth config struct (json -> yaml)
- Update CLI configs to use pre-hashed API keys
- Remove double hashing in WebSocket client
- Fix port mapping (9102 -> 9103) in CLI commands
- Update permission keys to use jobs:read, jobs:create, etc.
- Clean up all debug logging from CLI and server
- All user roles now authenticate correctly:
* Admin: Can queue jobs and see all jobs
* Researcher: Can queue jobs and see own jobs
* Analyst: Can see status (read-only access)
Multi-user authentication is now fully functional.
- Add end-to-end tests for complete workflow validation
- Include integration tests for API and database interactions
- Add unit tests for all major components and utilities
- Include performance tests for payload handling
- Add CLI API integration tests
- Include Podman container integration tests
- Add WebSocket and queue execution tests
- Include shell script tests for setup validation
Provides comprehensive test coverage ensuring platform reliability
and functionality across all components and interactions.
