- Replace 'make test-full' with 'make test' throughout docs
- Replace 'make self-cleanup' with 'make clean'
- Replace 'make tech-excellence' with 'make complete-suite'
- Replace 'make deploy-up' with 'make dev-up'
- Update docker-compose commands to docker compose v2
- Update CI workflow to use new Makefile targets
- Fix YAML tags in auth config struct (json -> yaml)
- Update CLI configs to use pre-hashed API keys
- Remove double hashing in WebSocket client
- Fix port mapping (9102 -> 9103) in CLI commands
- Update permission keys to use jobs:read, jobs:create, etc.
- Clean up all debug logging from CLI and server
- All user roles now authenticate correctly:
* Admin: Can queue jobs and see all jobs
* Researcher: Can queue jobs and see own jobs
* Analyst: Can see status (read-only access)
Multi-user authentication is now fully functional.
