From 44ff2a331c978d29741de8ee0fdc4e5b48088ace Mon Sep 17 00:00:00 2001
From: jfraeys <13443851+jfraeys@users.noreply.github.com>
Date: Sat, 25 Nov 2023 02:08:27 -0500
Subject: [PATCH] Update README.md

---
 README.md | 83 +++++++++++++++++++++++++++++++++++++++++++++++++++++--
 1 file changed, 81 insertions(+), 2 deletions(-)

diff --git a/README.md b/README.md
index 78e4ac7..3ca9626 100755
--- a/README.md
+++ b/README.md
@@ -8,20 +8,99 @@ This repository contains my personal dotfiles. These configurations are tailored
 - **bin**: Custom scripts and binaries.
 - **nvim**: Neovim editor configurations.
 - **tmux**: Tmux terminal multiplexer configurations.
+- **git**: Git configurations.
+- **skhd**: Skhd configurations.
+- **yabai**: Yabai window manager configurations.
+- **conda**: Conda configurations.
+- **dask**: Dask configurations.
+- **gh**: GitHub CLI configurations.
+- **jupyter**: Jupyter configurations.
+- **parallel**: GNU Parallel configurations.
+- **tox**: Tox configurations.
 - ... (add more directories as needed)
 
+Feel free to extend the list of directories as your dotfiles collection evolves. Each directory is organized to hold specific configurations for various tools and utilities in your development environment.
+
 ## Setup
 
 To use these dotfiles on your system:
 
-1. Clone the repository to your home directory:
+1. **Clone the repository to your home directory:**
 
     ```bash
     git clone https://github.com/your-username/.dotfiles.git ~/.dotfiles
     cd ~/.dotfiles
     ```
 
-3. Optionally, run setup script available in the repository.
+2. **Run the setup script available in the repository.**
+
     ```bash
     ./setup.sh
     ```
+
+## Installation Details
+
+### Prerequisites
+
+- **Git:** Ensure that Git is installed on your system.
+
+    ```bash
+    if ! command -v git &> /dev/null; then
+        echo "Git is not installed. Aborting." >&2
+        exit 1
+    fi
+    ```
+
+### Submodules
+
+Make sure to initialize and update any submodules:
+
+```bash
+git submodule init
+git submodule update
+```
+
+## Stowing Configurations
+
+The dotfiles are organized into categories:
+
+### Base Configurations (Installable by All Users)
+
+- zsh
+- vim
+- nvim
+- tmux
+- git
+
+### User-Only Configurations (For Local Users)
+
+- skhd
+- yabai
+- conda
+- dask
+- gh
+- jupyter
+- parallel
+- tox
+
+## Running Stow
+
+To stow configurations, run the following commands for each directory:
+
+```bash
+echo "Stowing apps for user: ${USER}"
+
+# Install apps available to local users and root
+for app in "${base[@]}"; do
+    stowit "${HOME}" "${app}"
+done
+
+# Install only user space folders
+for app in "${useronly[@]}"; do
+    if [[ ! "$(whoami)" = "root" ]]; then
+        stowit "${HOME}" "${app}"
+    fi
+done
+
+echo ""
+echo "##### ALL DONE"